Bioconductor Microarray Data Analysis

affy - expression summaries from raw Affymetrix data.

multtest - multiple testing procedures for differential expression.

annaffy - compile biological metadata for Affymetrix probe ids.

annaffy search - search biological metadata for Affymetrix probe ids.

Upload Manager - upload files for use with Bioconductor.

Job Results - lookup results for old jobs.

Log - display log of previously submitted jobs.

Clarkelabs microarray tools multiple microarray tools for performing most common tasks of microarray data analysis , including preprocessing, quality assessment, gene filtering, gene selection, visualization, MLP gene classification, etc. These tools were developed by using Matlab and R/Bioconductor packages.