Gene Expression Microarray
Published Breast Cancer Data Sets
  This page contains links to many of the published studies that have applied gene expression microarray technology to study breast cancer transcriptomes. Where available, links are provided to the papers at the appropriate journal website and to any supplementary data or data sets published by the authors. To submit other publications for listing at this site, please email our webmaster.
Georgetown University Breast Cancer Studies
 
1. Breast Cancer and Non-Cancer Data Set
Ellis et al., 2002 Link to Paper (at Clin Cancer Res)  Link to Data Set
 
2. Antiestrogen Resistance Data Sets (expression arrays and SAGE)
Gu et al., 2002 Link to Paper (at Cancer Res)  Link to Data Set
 
3. Microarray Normalization Method Using Breast Cancer Cell Line Data
Wang, et al., 2002. Link to Abstract (PubMed). 
 
Other Human Breast Cancer Studies
 
1.  Progression Study (Research Genetics)
Sgroi et al., 1999 Link to Paper (at Cancer Res)
 
2. Cell lines and Tumors (Stanford Data Set) 
Perou et al., 1999 Link to Paper Link to Data Set (at Proc Natl Acad Sci USA) and Data at Stanford
Sorlie et al. 2003  Link to Paper  (at Proc Natl Acad Sci USA)
 
3. French Breast Cancer Data Sets
Bertucci et al., 2000 Link to Paper  (at Hum Mol Genet)
Bertucci et al., 2002 Link to Paper  (at Hum Mol Genet)
Ginestier et al., 2002 Link to Paper (at Am J Pathol) - compares tissue and cDNA microarrays
Bertucci et al., 2002 Link to Paper (at N Y Acad Sci)
 
4. Norwegian Data Set 
Perou et al., 2000Link to Paper (at Nature)  Link to Data Set (at Nature) Link to Paper/Data (at Stanford)
Sorlie et al., 2001 Link to Paper  Link to Data Set (at Proc Natl Acad Sci USA)
Data also included in the Sorlie analysis (2003) 
 
5. Hereditary Breast Cancer Study
Hedenfalk et al., 2001 Link to Paper (at New Engl J Med)
 
6. Duke University Data Set
West et al., 2001 Link to Paper   Link to Data Set (at Proc Natl Acad Sci USA)
Data also included in the Sorlie analysis (2003) 
 
7. Rosetta Informatics/Dutch Breast Cancer Data Set
Van't Veer et al., 2002 Link to Paper  Link to Data Set (at Nature)
 van de Vijver et al., 2002  Link to Paper (at New Engl J Med)
Caldas & Aparicio 2002. Comment on above Link to Comment (at Nature)
Data also included in the Sorlie analysis (2003) 
 
8. Response to Chemotherapy 
Sotiriou et al., 2002 Link to Paper(at Breast Cancer Res)
Maxwell et al., 2003 (5-FU induced genes) Link to Paper (at Cancer Res)
 
9. BRCA1 Regulated Genes (mostly cell line study)
Welcsh et al., 2002 Link to Paper  Link to Dataset (at Proc Natl Acad Sci USA)
 
10. Risk of Recurrence
Ahr et al., 2002 Link to Abstract (at PubMed) Link to Paper (at Lancet - requires password for access)
 
11. Cell Lines and Primary Cultures
Leerkes et al., 2002.  Link to Paper (at Genomics via Idealibrary)
 
12. Glucocorticoid and Progestin Regulated Genes in Breast Cancer Cells
Wand & Nordeen et al., 2002.  Link to Paper (at Mol Endocrinol)   Link to Data Set
 
13. ERBB2 Amplicon
Kauraniemi et al., 2001.  Link to Paper (at Cancer Resh) 
 
14. 17q23 Amplicon
Monni et al., 2001.  Link to Paper (at Proc Natl Acad Sci USA)
 
15. German Data Set
Ahr et al., 2001. Link to Paper (at J Pathol)  Link to Data Set
 
16.  Fine Needle Aspiration Study
Sotiriou et al., 2002. Link to Paper (at Breast Cancer Res)
 
17. Desmoplastic Response Study (SAGE only)
Iacobuzio-Donahue et al., 2002. Link to Paper (at Cancer Res)
 
18. Estrogen Receptor Status Classifier (see also #6 for similar study)
Pusztai, et al., 2004 Link to Paper (at Clinical Cancer Research )
Nagai, et al., 2004 Link to Paper (at International Journal of Cancer)
Gruvberger, et al., 2001 Link to Paper (at Cancer Res)
 
19. SERM-induced Genes in ER-transfected MDA-MB-231 Cells
Levenson et al., 2001.  Link to Paper (at Cancer Res)
 
20. DCIS With and Without Necrosis
Adeyinka et al., 2002. Link to Paper (at Clin Cancer Res)
 
21. Oxidative Stress in MCF-7 cells 
Chaung et al., 2002.  Link to Paper (at Cancer Res)
 
22. c-erbB2 Regulated Genes in Breast Cancer Cell Lines
Wilson et al., 2002.  Link to Paper  (at Am J Pathol)
 
23. Gene Amplifications from Breast Cancer Microarrays
Dressman et al., 2003.  Link to Paper  (at Cancer Res)
 
24. Oxford University Breast Cancer Series
Sotiriou et al., 2003.  Link to Paper  (at Proc Natl Acad Sci USA)
 
25. Normal and Breast Cancer Biopsies
Jiang et al., 2003.  Link to Paper  (at Oncogene)
 
26. Aggressive Behavior in Breast Cancer Cell Lines
Zajchowski et al., 2001.  Link to Paper  (at Cancer Res)
 
27. ER-Associated Genes in Breast Biopsies
Dressman et al., 2001.  Link to Paper  (at Pharmacogenomics J)
 
28. Estrogen-Induced Genes in Breast Cancer Cell Lines
Soulez & Parker, 2001.  Link to Paper  (at J Mol Endocrinol)
Inoue et al., 2002.  Link to Paper  (at J Mol Endocrinol) 
Jelinsky et al., 2003 (rodent kidney).  Link to Paper (at Endocrinology)
Omopto & Hayashi, 2002. Link to Paper  (at PubMed)
Frasor et al., 2003. Link to Paper (at Endocrinology)
Frasor et al., 2004. Link to Paper (at Endocrinology)
Hayashi, et al., 2004. Link to Paper (at Endocrine-Related Cancer)
Tee, et al, 2004 Link to Paper (at The American Society for Cell Biology )
Stossi, et al., 2004. Link to Paper (at Endocrinology )
Terasaka, et al., 2004. Link to Paper (at Toxicogenomics)
Nagahata, et al., 2004. Link to Paper (at Cancer Sci )
ERGDB, et al., Link to Paper (at Nucleic Acids Research )
Studies in Rodents
 
1. DMBA/PhIP Mammary Tumor Study (rat)
Kuramoto et al. (2002)  Link to Paper (at Cancer Res)
 
2. Chemoprevention by Methylseleninic Acid (rat)
Dong et al (2002)  Link to Abstract (at PubMed)
 
3. Vorozole (aromatase inhibitor) Study (rat)
Wang et al. (2001)  Link to Abstract (at PubMed)
 
4. Prolactin-Regulated Genes (mouse)
Hou et al. (2000)  Link to Paper (at Endocrinology)
 
5. Mammary Gland Organogenesis (mouse)
Master et al. (2002)  Link to Abstract (at Mol Endocrinol)
 
6. Metastasis in Rat Mammary Adenocarcinomas
Wang et al. (2002)  Link to Paper (at Cancer Res)
 
7. Profiles of PhIP and DMBA Induced Rat Mammary Tumors
Shan et al. (2002)  Link to Paper (at Carcinogenesis)
 
8. Beta-Catenin Regulated Genes in Mouse Mammary Gland
Renou et al. (2003)  Link to Paper  (at Oncogene)